Next Generation Sequence Analysis flow chart:
Standard Bioinformatic Analysis
Gene Arrays standard bioinformatics analysis is currently included in the price of all the sequencing projects using proprietary Illumina pipeline software, this includes:
- Image analysis to identify individual clusters of reads
- At each cycle of the sequencing run, using the relative intensity levels at each cluster to perform Base-Calling
- Generation of sequence reads with associated quality scores for each base
- Generation of filtered read data, based on the per-base quality scores
- Generation of a customised Pipeline report, summarising run statistics and quality control analysis
Advanced Bioinformatic Analysis
Alignment to Reference Sequence
- Mapping of all reads to a specified reference genome
- Statistic report detailing coverage, orientation of mapped reads, and numbers of unmapped reads
- Summary of coverage available in both graphical and tabular format
Visualizing sequence data within a genome browser
Re-sequencing and polymorphism detection
- Mutation detection in samples
- Novel mutation discoveries
- Annotation of sequence polymorphisms
- Functional analysis of target genes
ChIP Sequencing
- ChIP-seq analysis to determine genomic regions and peaks
- Annotation of ChIP-seq regions and Peaks
- Sequence motif analysis
- Functional analyses of ChIP-seq target genes
RNA Sequencing
- Identification of exon splice crossing sequencing reads
- Identification of the differences in gene expression between the control and treated samples
- Identification of the differences in alternative splicing between the control and treated samples
- Full gene annotation
Small RNA Sequencing
- Discovering microRNAs and analysis
- Discovering novel microRNAs from deep sequencing data using RNA secondary structure information
Have any questions? Call us or Request a Quote
If you have any questions? Help with Experimental Design? Price Quote? Have any questions related to Genome sequencing, Microarrays and Bioinformatic Support, contact us.
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Gene Arrays, provides microarray & sequencing services and their technical team is very good and co-operative. Asked them for advanced analysis of microarray data from human and cell lines, they did very good job and very fast turnover time. Thank you "Gene Arrays", I recommend to go with them.
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I spoke with technical team for experimental design for microarrays (GEP) and ChIP-seq. Tech team help me for advanced microarray data analysis and ChIP-seq data so quickly. Thank you and I recommend to take services from Gene Arrays.
Company Info:
Gene Arrays
Vedic Research Inc.
Address:
1975 Washington Ave,
Seaford, NY 11783
USA
Phone number:
+1 (917) 719-0012
Email:
info@genearrays.com
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